Generated with ETE http://etetoolkit.org Generated with ETE http://etetoolkit.org 83 98 Clostridium methylpentosum DSM 5476 (CLOSTMETH_00901) - CLOSTMETH_00901 93 99 Actinomyces urogenitalis DSM 15434 (HMPREF0058_2151) - HMPREF0058_2151 Arcanobacterium haemolyticum DSM 20595 (ARCH_0085) - Arch_0085 Collinsella stercoris DSM 13279 (COLSTE_01738) - COLSTE_01738 Collinsella intestinalis DSM 13280 (COLINT_02557) - COLINT_02557 17 Coriobacterium glomerans PW2 (CORGL_1123) - Corgl_1123 22 Olsenella uli DSM 7084 (OLSU_1362) - Olsu_1362 Atopobium vaginae PB189-T1-4 (HMPREF9248_0287) - HMPREF9248_0287 Atopobium vaginae DSM 15829 (2 inparalogs) AVAGD15_010100001862,HMPREF0091_10367 80 Atopobium rimae ATCC 49626 (ATORI0001_0106) - ATORI0001_0106 Atopobium parvulum DSM 20469 (APAR_0975) - Apar_0975 94 98 Cryptobacterium curtum DSM 15641 (CCUR_02470) - Ccur_02470 99 Eggerthella sp. YY7918 (EGYY_23190) - EGYY_23190 Eggerthella lenta DSM 2243 (ELEN_0415) - Elen_0415 95 Collinsella stercoris DSM 13279 (COLSTE_00807) - COLSTE_00807 Collinsella intestinalis DSM 13280 (COLINT_02723) - COLINT_02723 84 Collinsella aerofaciens ATCC 25986 (COLAER_01534) - COLAER_01534 Coriobacterium glomerans PW2 (CORGL_0659) - Corgl_0659 83 51 Butyrivibrio crossotus DSM 2876 (BUTYVIB_00889) - BUTYVIB_00889 75 16 53 94 97 86 Olsenella uli DSM 7084 (OLSU_0586) - Olsu_0586 Atopobium vaginae DSM 15829 (2 inparalogs) AVAGD15_010100005571,HMPREF0091_10772 Atopobium vaginae PB189-T1-4 (HMPREF9248_0705) - HMPREF9248_0705 Atopobium rimae ATCC 49626 (ATORI0001_0762) - ATORI0001_0762 Atopobium parvulum DSM 20469 (APAR_0999) - Apar_0999 Eggerthella lenta DSM 2243 (ELEN_2032) - Elen_2032 Actinomyces odontolyticus ATCC 17982 (ACTODO_02068) - ACTODO_02068 Actinomyces sp. oral taxon 180 str. F0310 (HMPREF9006_0785) - HMPREF9006_0785 97 Actinomyces sp. oral taxon 170 str. F0386 (HMPREF9056_00427) - HMPREF9056_00427 Actinomyces sp. oral taxon 448 str. F0400 (HMPREF9062_2291) - HMPREF9062_2291 99 Clostridium leptum DSM 753 (CLOLEP_02391) - CLOLEP_02391 Lachnospiraceae bacterium 9_1_43BFAA (HMPREF0987_02233) - HMPREF0987_02233 17 Eggerthella sp. YY7918 (EGYY_16490) - EGYY_16490 Clostridium scindens ATCC 35704 (CLOSCI_02429) - CLOSCI_02429 Blautia hydrogenotrophica DSM 10507 (RUMHYD_02739) - RUMHYD_02739 92 Eubacterium biforme DSM 3989 (EUBIFOR_00108) - EUBIFOR_00108 Enterococcus italicus DSM 15952 (HMPREF9088_1115) - HMPREF9088_1115 89 Roseburia inulinivorans DSM 16841 (ROSEINA2194_02605) - ROSEINA2194_02605 98 Lachnospiraceae bacterium 1_4_56FAA (HMPREF0988_01785) - HMPREF0988_01785 92 96 Streptococcus equinus ATCC 9812 (AMRA) - HMPREF0819_0731 Streptococcus macedonicus ACA-DC 198 (SMA_1308) - SMA_1308 27 Streptococcus suis 05ZYH33 (SSU05_1284) - SSU05_1284 Streptococcus sanguinis SK36 (SSA_1519) - SSA_1519 69 Streptococcus anginosus F0211 (HMPREF0813_00214) - HMPREF0813_00214 Streptococcus salivarius 57.I (SSAL_00596) - Ssal_00596 Streptococcus vestibularis F0396 (HMPREF9192_0915) - HMPREF9192_0915 53 Streptococcus equi subsp. zooepidemicus (SEZ_0846) - SZO_11150 Streptococcus pyogenes M1 GAS (AMRA) - SPy_0797 53 Streptococcus ictaluri 707-05 (STRIC_1480) - STRIC_1480 Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957 (SDD27957_03795) - SDD27957_03795 97 Streptococcus sp. oral taxon 056 str. F0418 (HMPREF9182_0086) - HMPREF9182_0086 Streptococcus parasanguinis ATCC 903 (AMRA) - HMPREF8577_0285 Streptococcus australis ATCC 700641 (3 inparalogs) HMPREF9961_1979,HMPREF9961_1978,RGPX3... 76 Streptococcus gordonii str. Challis substr. CH1 (SGO_1015) - SGO_1015 79 Streptococcus anginosus SK52 = DSM 20563 (HMPREF9966_0496) - HMPREF9966_0496 Streptococcus thermophilus LMG 18311 (RGPX3) - stu1480 98 Streptococcus constellatus subsp. pharyngis SK1060 = CCUG 46377 (HMPREF1042_1300) - HMPREF1042_1300 Streptococcus cristatus ATCC 51100 (2 inparalogs) HMPREF9960_0557,RGPX3 92 Eubacterium eligens ATCC 27750 (EUBELI_00100) - EUBELI_00100 85 Anaerotruncus colihominis DSM 17241 (ANACOL_02154) - ANACOL_02154 98 Eubacterium saburreum DSM 3986 (HMPREF0381_0558) - HMPREF0381_0558 Lachnospiraceae oral taxon 107 str. F0167 (HMPREF0491_02850) - HMPREF0491_02850 92 96 Clostridium saccharolyticum WM1 (CLOSA_3821) - Closa_3821 99 butyrate-producing bacterium SS3/4 (CK3_20300) - CK3_20300 77 Clostridium symbiosum WAL-14163 (HMPREF9474_00364) - HMPREF9474_00364 Clostridium cf. saccharolyticum K10 (CLS_11550) - CLS_11550 96 Clostridium bolteae ATCC BAA-613 (CLOBOL_05049) - CLOBOL_05049 Clostridiales bacterium 1_7_47FAA (CBFG_02353) - CBFG_02353 Oribacterium sp. oral taxon 078 str. F0262 (GCWU000341_01949) - GCWU000341_01949 Oribacterium sinus F0268 (HMPREF6123_0368) - HMPREF6123_0368 Oribacterium sp. oral taxon 108 str. F0425 (HMPREF9124_1758) - HMPREF9124_1758 94 Macrococcus caseolyticus JCSC5402 (MCCL_0671) - MCCL_0671 78 Staphylococcus hominis subsp. hominis C80 (HMPREF0798_01133) - HMPREF0798_01133 95 99 99 Roseiflexus castenholzii DSM 13941 (RCAS_0498) - Rcas_0498 91 62 Kytococcus sedentarius DSM 20547 (KSED_18700) - Ksed_18700 Frankia sp. EAN1pec (FRANEAN1_2144) - Franean1_2144 Candidatus Solibacter usitatus Ellin6076 (ACID_4856) - Acid_4856 46 Nostoc punctiforme PCC 73102 (NPUN_F2442) - Npun_F2442 Exiguobacterium sibiricum 255-15 (EXIG_2573) - Exig_2573 57 Ornithinibacillus scapharcae TW25 (OTW25_010100002834) - OTW25_010100002834 Geobacillus sp. WCH70 (GWCH70_3265) - GWCH70_3265 94 99 Candidatus Koribacter versatilis Ellin345 (ACID345_0837) - Acid345_0837 63 Sulfolobus solfataricus P2 (SSO3228) - SSO3228 89 93 Metallosphaera cuprina Ar-4 (MCUP_1833) - Mcup_1833 Metallosphaera sedula DSM 5348 (MSED_0238) - Msed_0238 Acidianus hospitalis W1 (AHOS_1075) - Ahos_1075 53 Sulfolobus islandicus REY15A (SIRE_2015) - SiRe_2015 99 Sulfolobus tokodaii str. 7 (STK_23490) - ST2349 Sulfolobus acidocaldarius DSM 639 (SACI_0418) - Saci_0418 98 57 99 Paenibacillus terrae HPL-003 (HPL003_00355) - HPL003_00355 87 Paenibacillus polymyxa E681 (PPE_03729) - PPE_03729 Exiguobacterium sp. AT1b (EAT1B_1509) - EAT1b_1509 Paenibacillus polymyxa SC2 (PPSC2_C4208) - PPSC2_c4208 Clostridium cellulovorans 743B (CLOCEL_0961) - Clocel_0961 Clostridium acetobutylicum ATCC 824 (CA_C2406) - CA_C2406 83 94 92 40 91 Lactobacillus salivarius UCC118 (RFBX) - LSL_1555 Sphaerochaeta pleomorpha str. Grapes (SPIGRAPES_1647) - SpiGrapes_1647 Oceanobacillus iheyensis HTE831 (OB2885) - OB2885 Victivallis vadensis ATCC BAA-548 (VVAD_PD2269) - Vvad_PD2269 85 89 96 86 Acaryochloris marina MBIC11017 (AM1_3621) - AM1_3621 1 gamma proteobacterium HTCC5015 (GP5015_421) - GP5015_421 Erythrobacter litoralis HTCC2594 (ELI_13310) - ELI_13310 97 Calditerrivibrio nitroreducens DSM 19672 (CALNI_1803) - Calni_1803 34 Pseudomonas aeruginosa PAO1 (WZX) - PA3153 93 Polaromonas naphthalenivorans CJ2 (PNAP_3125) - Pnap_3125 Lautropia mirabilis ATCC 51599 (HMPREF0551_2361) - HMPREF0551_2361 93 Arcobacter butzleri RM4018 (ABU_0682) - Abu_0682 Geobacter lovleyi SZ (GLOV_1503) - Glov_1503 60 94 82 84 Bordetella avium 197N (BAV0081) - BAV0081 88 Weeksella virosa DSM 16922 (WEEVI_0847) - Weevi_0847 89 Odoribacter splanchnicus DSM 20712 (ODOSP_0955) - Odosp_0955 Prevotella sp. oral taxon 317 str. F0108 (HMPREF0670_00205) - HMPREF0670_00205 95 Prevotella dentalis DSM 3688 (PREDE_0357) - HMPREF9136_0418 Prevotella multisaccharivorax DSM 17128 (PREMU_1759) - Premu_1759 50 41 90 34 96 Xenorhabdus bovienii SS-2004 (XBJ1_4317) - XBJ1_4317 87 84 Methanospirillum hungatei JF-1 (MHUN_0388) - Mhun_0388 Methanoculleus marisnigri JR1 (MEMAR_0698) - Memar_0698 84 Bacillus sp. 2_A_57_CT2 (HMPREF1013_01463) - HMPREF1013_01463 90 Listeria ivanovii subsp. ivanovii PAM 55 (LIV_2637) - LIV_2637 Thermus thermophilus HB27 (TT_C0283) - TTC0283 58 99 Idiomarina baltica OS145 (OS145_11421) - OS145_11421 Bacteroides stercoris ATCC 43183 (BACSTE_01317) - BACSTE_01317 Methanococcus vannielii SB (MEVAN_0202) - Mevan_0202 91 Planctomyces brasiliensis DSM 5305 (PLABR_1622) - Plabr_1622 Photorhabdus luminescens subsp. laumondii TTO1 (WZXA) - plu4800 Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 (WZXA) - PAU_04315 55 99 Rhodothermus marinus DSM 4252 (RMAR_1881) - Rmar_1881 Meiothermus ruber DSM 1279 (MRUB_0363) - Mrub_0363 56 25 Anaerobaculum hydrogeniformans ATCC BAA-1850 (HMPREF1705_02303) - HMPREF1705_02303 42 99 Vibrio tubiashii ATCC 19109 (VITU9109_13077) - VITU9109_13077 97 73 Variovorax paradoxus S110 (VAPAR_1930) - Vapar_1930 95 Acidovorax sp. JS42 (AJS_3022) - Ajs_3022 Acinetobacter baumannii ATCC 19606 (HMPREF0010_03283) - HMPREF0010_03283 86 Citromicrobium bathyomarinum JL354 (CBATJ_010100000075) - CbatJ_010100000075 94 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 (CAP2UW1_0103) - CAP2UW1_0103 Achromobacter xylosoxidans A8 (AXYL_06289) - AXYL_06289 Ralstonia eutropha H16 (H16_B0030) - H16_B0030 98 Thermovirga lienii DSM 17291 (TLIE_1822) - Tlie_1822 15 5 Methanosarcina acetivorans C2A (MA_4450) - MA4450 Methanosarcina mazei Go1 (MM_1124) - MM_1124 Methanosarcina barkeri str. Fusaro (2 inparalogs) MBAR_A1112,MBAR_A2973 Methanospirillum hungatei JF-1 (MHUN_2377) - Mhun_2377 10 Methanosphaerula palustris E1-9c (MPAL_0587) - Mpal_0587 Methanosarcina barkeri str. Fusaro (MBAR_A1141) - Mbar_A1141 Methanosarcina mazei Go1 (MM_1156) - MM_1156 95 93 Chlorobium phaeobacteroides DSM 266 (CPHA266_2622) - Cpha266_2622 99 Dethiobacter alkaliphilus AHT 1 (DEALDRAFT_1619) - DealDRAFT_1619 16 Thioalkalivibrio sp. K90mix (TK90_1563) - TK90_1563 Chlorobium luteolum DSM 273 (PLUT_1868) - Plut_1868 Ahrensia sp. R2A130 (R2A130_1611) - R2A130_1611 84 Pseudomonas mendocina ymp (PMEN_1863) - Pmen_1863 Roseovarius nubinhibens ISM (ISM_03580) - ISM_03580 93 82 Propionibacterium acnes HL037PA2 (HMPREF9621_01450) - HMPREF9621_01450 78 Propionibacterium acnes SK182B-JCVI (HMPREF1162_1267) - HMPREF1162_1267 Propionibacterium acnes KPA171202 (PPA2181) - PPA2181 85 Actinomyces sp. oral taxon 180 str. F0310 (HMPREF9006_1955) - HMPREF9006_1955 Actinomyces odontolyticus ATCC 17982 (ACTODO_00135) - ACTODO_00135 35 88 Brachybacterium faecium DSM 4810 (BFAE_21000) - Bfae_21000 Mobiluncus curtisii subsp. curtisii ATCC 35241 (HMPREF0574_0792) - HMPREF0574_0792 Mobiluncus mulieris 28-1 (HMPREF0578_0053) - HMPREF0578_0053 90 Actinomyces coleocanis DSM 15436 (HMPREF0044_0805) - HMPREF0044_0805 98 Actinomyces sp. oral taxon 175 str. F0384 (HMPREF9058_1036) - HMPREF9058_1036 99 Actinomyces urogenitalis DSM 15434 (HMPREF0058_2113) - HMPREF0058_2113 Actinomyces sp. oral taxon 170 str. F0386 (HMPREF9056_00392) - HMPREF9056_00392 98 Leptothrix cholodnii SP-6 (LCHO_0294) - Lcho_0294 Alicycliphilus denitrificans K601 (ALIDE2_1294) - Alide2_1294 Bordetella petrii DSM 12804 (BPET1527) - Bpet1527 98 Pseudogulbenkiania ferrooxidans 2002 (FURADRAFT_3689) - FuraDRAFT_3689 Chromobacterium violaceum ATCC 12472 (WZX) - CV_4123 82 Rhodomicrobium vannielii ATCC 17100 (RVAN_3110) - Rvan_3110 Mesorhizobium ciceri biovar biserrulae WSM1271 (MESCI_5361) - Mesci_5361 Bradyrhizobium japonicum USDA 6 (2 inparalogs) BJ6T_63860,BJ6T_63300 62 46 78 Chryseobacterium gleum ATCC 35910 (HMPREF0204_12131) - HMPREF0204_12131 Chitinophaga pinensis DSM 2588 (CPIN_4759) - Cpin_4759 17 Fluviicola taffensis DSM 16823 (FLUTA_2175) - Fluta_2175 89 Polaribacter sp. MED152 (MED152_12399) - MED152_12399 Lacinutrix sp. 5H-3-7-4 (LACAL_1034) - Lacal_1034 Sulfurihydrogenibium azorense Az-Fu1 (SULAZ_0348) - SULAZ_0348 81 Sulfurimonas denitrificans DSM 1251 (SUDEN_1420) - Suden_1420 Sulfurovum sp. NBC37-1 (SUN_0096) - SUN_0096 40 Waddlia chondrophila WSU 86-1044 (WZX) - wcw_1818 4 Fluviicola taffensis DSM 16823 (FLUTA_2166) - Fluta_2166 Desulfobacca acetoxidans DSM 11109 (DESAC_2197) - Desac_2197 64 99 Taylorella asinigenitalis MCE3 (TASI_0390) - TASI_0390 Taylorella equigenitalis MCE9 (TEQUI_1020) - TEQUI_1020 Porphyromonas gingivalis W83 (PORS) - PG1137 Porphyromonas gingivalis ATCC 33277 (PORS) - PGN_1235 74 Porphyromonas endodontalis ATCC 35406 (POREN0001_1933) - POREN0001_1933 Porphyromonas asaccharolytica DSM 20707 (PORAS_0886) - Poras_0886 Porphyromonas uenonis 60-3 (PORUE0001_0446) - PORUE0001_0446 96 Staphylococcus aureus subsp. aureus MSHR1132 (CCE57986.1) - SAMSHR1132_01330 Bacillus sp. NRRL B-14911 (B14911_03279) - B14911_03279 98 99 31 Clostridium phytofermentans ISDg (CPHY_2908) - Cphy_2908 71 butyrate-producing bacterium SS3/4 (CK3_15540) - CK3_15540 88 Clostridium symbiosum WAL-14163 (HMPREF9474_02867) - HMPREF9474_02867 99 Clostridium saccharolyticum WM1 (CLOSA_3296) - Closa_3296 Clostridium bolteae ATCC BAA-613 (CLOBOL_05180) - CLOBOL_05180 Clostridiales bacterium 1_7_47FAA (CBFG_03851) - CBFG_03851 24 64 89 Bacteroides pectinophilus ATCC 43243 (BACPEC_00872) - BACPEC_00872 94 Eubacterium eligens ATCC 27750 (EUBELI_01196) - EUBELI_01196 Butyrivibrio crossotus DSM 2876 (BUTYVIB_01525) - BUTYVIB_01525 91 Eubacterium ventriosum ATCC 27560 (EUBVEN_02396) - EUBVEN_02396 Eubacterium rectale DSM 17629 (EUR_10210) - EUR_10210 90 Marvinbryantia formatexigens DSM 14469 (BRYFOR_08782) - BRYFOR_08782 83 90 Lachnospiraceae bacterium 3_1_57FAA_CT1 (HMPREF0994_03081) - HMPREF0994_03081 Roseburia inulinivorans DSM 16841 (ROSEINA2194_04468) - ROSEINA2194_04468 97 Roseburia hominis A2-183 (RHOM_05120) - RHOM_05120 Roseburia intestinalis XB6B4 (RO1_07410) - RO1_07410 28 98 Blautia hansenii DSM 20583 (BLAHAN_05208) - BLAHAN_05208 78 Ruminococcus sp. 5_1_39BFAA (RSAG_00741) - RSAG_00741 Ruminococcus obeum A2-162 (CK5_07010) - CK5_07010 Ruminococcus obeum ATCC 29174 (SPOVB) - RUMOBE_00837 Blautia hydrogenotrophica DSM 10507 (RUMHYD_01713) - RUMHYD_01713 Lachnospiraceae bacterium 2_1_46FAA (HMPREF9477_00517) - HMPREF9477_00517 37 91 71 31 Coprococcus comes ATCC 27758 (COPCOM_00383) - COPCOM_00383 Dorea formicigenerans ATCC 27755 (DORFOR_01423) - DORFOR_01423 75 Dorea longicatena DSM 13814 (DORLON_02445) - DORLON_02445 99 Clostridium hylemonae DSM 15053 (CLOHYLEM_06784) - CLOHYLEM_06784 Clostridium scindens ATCC 35704 (CLOSCI_01398) - CLOSCI_01398 97 89 Lachnospiraceae bacterium 1_4_56FAA (HMPREF0988_02370) - HMPREF0988_02370 60 Ruminococcus gnavus ATCC 29149 (RUMGNA_01750) - RUMGNA_01750 Clostridium sp. D5 (HMPREF0240_04033) - HMPREF0240_04033 98 Ruminococcus torques ATCC 27756 (RUMTOR_00723) - RUMTOR_00723 93 Ruminococcus lactaris ATCC 29176 (RUMLAC_01912) - RUMLAC_01912 Ruminococcus torques L2-14 (RTO_17380) - RTO_17380 Lachnospiraceae bacterium 9_1_43BFAA (HMPREF0987_00415) - HMPREF0987_00415 78 Coprococcus catus GD/7 (CC1_34400) - CC1_34400 55 Eubacterium hallii DSM 3353 (EUBHAL_00845) - EUBHAL_00845 Anaerostipes caccae DSM 14662 (ANACAC_00394) - ANACAC_00394 245018 (CL2_08300) - CL2_08300 74 98 89 99 Ruminococcus champanellensis 18P13 (RUM_15430) - RUM_15430 95 Acidilobus saccharovorans 345-15 (ASAC_0657) - ASAC_0657 99 Thermaerobacter subterraneus DSM 13965 (THESUDRAFT_2337) - ThesuDRAFT_2337 Thermaerobacter marianensis DSM 12885 (TMAR_1365) - Tmar_1365 Ruminococcus flavefaciens FD-1 (RFLAF_010100013065) - RflaF_010100013065 73 40 88 Clostridium bartlettii DSM 16795 (CLOBAR_02605) - CLOBAR_02605 71 Clostridium leptum DSM 753 (CLOLEP_00396) - CLOLEP_00396 77 Anaerotruncus colihominis DSM 17241 (ANACOL_01504) - ANACOL_01504 Subdoligranulum variabile DSM 15176 (SUBVAR_05205) - SUBVAR_05205 Faecalibacterium cf. prausnitzii KLE1255 (HMPREF9436_01338) - HMPREF9436_01338 Faecalibacterium prausnitzii L2-6 (FP2_19320) - FP2_19320 Clostridium lentocellum DSM 5427 (CLOLE_0619) - Clole_0619 Clostridium methylpentosum DSM 5476 (CLOSTMETH_01551) - CLOSTMETH_01551 Clostridium lentocellum DSM 5427 (CLOLE_2884) - Clole_2884 Epulopiscium sp. N.t. morphotype B (EPULO_010100001301) - Epulo_010100001301 51 96 19 97 Brevibacillus laterosporus LMG 15441 (BRLA_C41630) - BRLA_c41630 Paenibacillus polymyxa E681 (PPE_00481) - PPE_00481 Paenibacillus terrae HPL-003 (HPL003_14325) - HPL003_14325 86 76 96 30 41 19 98 98 Acetonema longum DSM 6540 (ALO_07143) - ALO_07143 Thermosinus carboxydivorans Nor1 (TCARDRAFT_0957) - TcarDRAFT_0957 Thermosinus carboxydivorans Nor1 (TCARDRAFT_2451) - TcarDRAFT_2451 67 Selenomonas sputigena ATCC 35185 (SELSP_1368) - SELSPUOL_00851 Mitsuokella multacida DSM 20544 (MITSMUL_05243) - MITSMUL_05243 98 Selenomonas sp. oral taxon 149 str. 67H29BP (SPOVB) - HMPREF9166_0033 Selenomonas flueggei ATCC 43531 (SPOVB) - HMPREF0908_0660 47 Centipeda periodontii DSM 2778 (SPOVB) - HMPREF9081_1572 82 Selenomonas noxia ATCC 43541 (HMPREF7545_1818) - HMPREF7545_1818 Selenomonas sp. oral taxon 137 str. F0430 (HMPREF9162_1815) - HMPREF9162_1815 98 Phascolarctobacterium succinatutens YIT 12067 (HMPREF9443_00052) - HMPREF9443_00052 Acidaminococcus fermentans DSM 20731 (ACFER_0169) - Acfer_0169 Acidaminococcus intestini RyC-MR95 (ACIN_2380) - Acin_2380 Megasphaera sp. UPII 135-E (HMPREF1040_1066) - HMPREF1040_1066 Megasphaera genomosp. type_1 str. 28L (HMPREF0889_0839) - HMPREF0889_0839 78 Megasphaera micronuciformis F0359 (HMPREF9429_01260) - HMPREF9429_01260 Megasphaera elsdenii DSM 20460 (MELS_1478) - MELS_1478 Veillonella sp. oral taxon 780 str. F0422 (HMPREF9200_0563) - HMPREF9200_0563 Veillonella sp. oral taxon 158 str. F0412 (HMPREF9199_1174) - HMPREF9199_1174 98 Veillonella parvula DSM 2008 (VPAR_1151) - Vpar_1151 52 Veillonella atypica ACS-049-V-Sch6 (HMPREF9321_1345) - HMPREF9321_1345 Veillonella dispar ATCC 17748 (VEIDISOL_00887) - VEIDISOL_00887 99 Acidaminococcus intestini RyC-MR95 (ACIN_0783) - Acin_0783 Acidaminococcus fermentans DSM 20731 (ACFER_1619) - Acfer_1619 Phascolarctobacterium succinatutens YIT 12067 (HMPREF9443_01683) - HMPREF9443_01683 83 Dialister microaerophilus UPII 345-E (HMPREF9220_0792) - HMPREF9220_0792 Dialister invisus DSM 15470 (GCWU000321_00505) - GCWU000321_00505 31 29 Megasphaera micronuciformis F0359 (HMPREF9429_01407) - HMPREF9429_01407 Megasphaera elsdenii DSM 20460 (MELS_1820) - MELS_1820 99 Megasphaera genomosp. type_1 str. 28L (HMPREF0889_1116) - HMPREF0889_1116 Megasphaera sp. UPII 135-E (HMPREF1040_0698) - HMPREF1040_0698 Veillonella sp. oral taxon 780 str. F0422 (HMPREF9200_0589) - HMPREF9200_0589 Veillonella atypica ACS-049-V-Sch6 (HMPREF9321_1228) - HMPREF9321_1228 99 Veillonella parvula DSM 2008 (VPAR_1361) - Vpar_1361 20 Veillonella sp. oral taxon 158 str. F0412 (HMPREF9199_1417) - HMPREF9199_1417 Veillonella dispar ATCC 17748 (VEIDISOL_00610) - VEIDISOL_00610 Heliobacterium modesticaldum Ice1 (HM1_0718) - HM1_0718 94 Sulfobacillus acidophilus TPY (TPY_0203) - TPY_0203 Symbiobacterium thermophilum IAM 14863 (2 inparalogs) STH3232,STH3233 99 96 Brevibacillus brevis NBRC 100599 (CSAA) - BBR47_16610 Bacillus pseudofirmus OF4 (BPOF4_05790) - BpOF4_05790 99 99 Planococcus donghaensis MPA1U2 (GPDM_16341) - GPDM_16341 81 Ornithinibacillus scapharcae TW25 (OTW25_010100005215) - OTW25_010100005215 Lysinibacillus fusiformis ZC1 (BFZC1_18455) - BFZC1_18455 90 Bacillus sp. B14905 (BB14905_12945) - BB14905_12945 Lysinibacillus sphaericus C3-41 (BSPH_1038) - Bsph_1038 86 Anoxybacillus flavithermus WK1 (AFLV_2654) - Aflv_2654 99 Bacillus cereus ATCC 14579 (BC_0894) - BC0894 Bacillus weihenstephanensis KBAB4 (BCERKBAB4_0782) - BcerKBAB4_0782 17 Bacillus cytotoxicus NVH 391-98 (BCER98_0712) - Bcer98_0712 Bacillus cereus SJ1 (BCSJ1_23749) - BCSJ1_23749 Bacillus anthracis str. Sterne (BAS0839) - BAS0839 Bacillus anthracis str. Ames (BA_0883) - BA_0883 11 99 Paenibacillus sp. oral taxon 786 str. D14 (POTG_03623) - POTG_03623 97 Paenibacillus terrae HPL-003 (HPL003_07700) - HPL003_07700 98 Paenibacillus polymyxa E681 (PPE_00044) - PPE_00044 Paenibacillus polymyxa M1 (YABM) - PPM_0041 Paenibacillus polymyxa SC2 (PPSC2_C0046) - PPSC2_c0046 Paenibacillus vortex V453 (PVOR_02356) - PVOR_02356 Paenibacillus sp. Y412MC10 (GYMC10_0042) - GYMC10_0042 75 Paenibacillus curdlanolyticus YK9 (PAECUDRAFT_2141) - PaecuDRAFT_2141 86 Paenibacillus mucilaginosus KNP414 (KNP414_07593) - KNP414_07593 Paenibacillus sp. HGF7 (HMPREF9413_6105) - HMPREF9413_6105 97 Bacillus clausii KSM-K16 (ABC0088) - ABC0088 61 Bacillus pseudofirmus OF4 (PSTA2) - BpOF4_08255 Bacillus halodurans C-125 (BH0071) - BH0071 94 95 98 46 Listeria grayi DSM 20601 (HMPREF0556_10105) - HMPREF0556_10105 19 Listeria monocytogenes str. Scott A (LTRB) - LMOSA_11080 Listeria monocytogenes EGD-e (LTRB) - lmo0215 39 99 Listeria ivanovii subsp. ivanovii PAM 55 (LIV_0185) - LIV_0185 Listeria seeligeri FSL N1-067 (NT03LS_0321) - NT03LS_0321 Listeria welshimeri serovar 6b str. SLCC5334 (LWE0177) - lwe0177 Listeria innocua Clip11262 (LIN0247) - lin0247 Oceanobacillus iheyensis HTE831 (OB0065) - OB0065 Ornithinibacillus scapharcae TW25 (OTW25_010100005485) - OTW25_010100005485 98