Generated with ETE http://etetoolkit.org Generated with ETE http://etetoolkit.org 88 Collimonas fungivorans Ter331 (YBIR) - CFU_1672 Enterobacteriaceae bacterium 9_2_54FAA (HMPREF0864_01397) - HMPREF0864_01397 Edwardsiella tarda EIB202 (ETAE_1541) - ETAE_1541 Rahnella sp. Y9602 (RAHAQ_1220) - Rahaq_1220 Rahnella aquatilis CIP 78.65 = ATCC 33071 (AEX51175.1) - Rahaq2_1294 Serratia proteamaculans 568 (SPRO_3360) - Spro_3360 Yersinia enterocolitica subsp. enterocolitica 8081 (YE1297) - YE1297 Cronobacter sakazakii ATCC BAA-894 (ESA_02522) - ESA_02522 88 Citrobacter koseri ATCC BAA-895 (CKO_02300) - CKO_02300 99 Citrobacter youngae ATCC 29220 (CIT292_07992) - CIT292_07992 Citrobacter sp. 30_2 (CSAG_00608) - CSAG_00608 Salmonella bongori NCTC 12419 (YBIR) - SBG_0721 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (YBIR) - STM0836 66 Salmonella enterica subsp. arizonae serovar str. RSK2980 (SARI_02088) - SARI_02088 Salmonella enterica subsp. enterica serovar Typhi str. CT18 (YBIR) - STY0877 Escherichia albertii TW07627 (ESCAB7627_3595) - ESCAB7627_3595 Escherichia coli CFT073 (YBIR) - c0904 Escherichia coli 536 (YBIR) - ECP_0832 90 Escherichia coli ATCC 8739 (YBIR) - EcolC_2825 99 Escherichia coli str. K-12 substr. DH10B (YBIR) - ECDH10B_0887 0 Escherichia coli str. K-12 substr. W3110 (YBIR) - 4062385 0 Escherichia coli BL21(DE3) (B21_00802) - B21_00802 0 Escherichia coli str. K-12 substr. MG1655 (YBIR) - b0818 Escherichia coli BL21(DE3) (YBIR) - ECD_00785 93 Shigella flexneri 2a str. 301 (YBIR) - SF0768 Escherichia coli O157:H7 str. EDL933 (YBIR) - Z1040 67 Enterobacter sp. 638 (ENT638_1305) - Ent638_1305 Enterobacter cloacae subsp. cloacae NCTC 9394 (ENC_19160) - ENC_19160 Enterobacter asburiae LF7a (ENTAS_1295) - Entas_1295 99 Enterobacter cancerogenus ATCC 35316 (ENTCAN_07845) - ENTCAN_07845 Enterobacter cloacae EcWSU1 (YBIR) - EcWSU1_01365 Enterobacter cloacae subsp. cloacae ATCC 13047 (ECL_02912) - ECL_02912 Citrobacter rodentium ICC168 (ROD_08201) - ROD_08201 99 Enterobacter cloacae SCF1 (ENTCL_3005) - Entcl_3005 Klebsiella oxytoca KCTC 1686 (KOX_15165) - KOX_15165 99 Enterobacter aerogenes KCTC 2190 (EAE_14660) - EAE_14660 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (YBIR) - KPN_00846 Erwinia billingiae Eb661 (EBC_14370) - EbC_14370 Pantoea ananatis LMG 20103 (YBIR) - PANA_1287 Pantoea vagans C9-1 (YBIR) - Pvag_0666 Pantoea sp. aB (PANABDRAFT_2144) - PanABDRAFT_2144 99 Pantoea sp. At-9b (PAT9B_1258) - Pat9b_1258 Plautia stali symbiont (PSTAS_010100002987) - Pstas_010100002987 Nitrosospira multiformis ATCC 25196 (NMUL_A1105) - Nmul_A1105 Ralstonia pickettii 12J (RPIC_4486) - Rpic_4486 98 Burkholderia mallei ATCC 23344 (BMA2948) - BMA2948 Burkholderia pseudomallei K96243 (BPSL3404) - BPSL3404 Burkholderia dolosa AUO158 (BDAG_00146) - BDAG_00146 98 Burkholderia vietnamiensis G4 (BCEP1808_0106) - Bcep1808_0106 Burkholderia ambifaria AMMD (BAMB_0088) - Bamb_0088 Burkholderia cenocepacia J2315 (BCAL0028) - BCAL0028 Burkholderia multivorans ATCC 17616 (2 inparalogs) BMUL_0097,BMUL_0097 Burkholderia gladioli BSR3 (BGLA_1G00840) - bgla_1g00840 Burkholderia glumae BGR1 (BGLU_1G00690) - bglu_1g00690 92 Burkholderia phymatum STM815 (BPHY_3035) - Bphy_3035 98 Burkholderia sp. YI23 (BYI23_A026580) - BYI23_A026580 Burkholderia rhizoxinica HKI 454 (RBRH_00819) - RBRH_00819 Variovorax paradoxus EPS (VARPA_5559) - Varpa_5559 Variovorax paradoxus S110 (VAPAR_4885) - Vapar_4885 Nautilia profundicola AmH (NAMH_0449) - NAMH_0449 89 Thermodesulfatator indicus DSM 15286 (THEIN_1283) - Thein_1283 Marinitoga piezophila KA3 (MARPI_0392) - Marpi_0392 Nitratifractor salsuginis DSM 16511 (NITSA_0983) - Nitsa_0983 96 98 Oceanithermus profundus DSM 14977 (OCEPR_0675) - Ocepr_0675 Chlorobium tepidum TLS (CT1965) - CT1965 83 Thermovibrio ammonificans HB-1 (THEAM_1139) - Theam_1139 Hippea maritima DSM 10411 (HIPMA_1327) - Hipma_1327 Desulfurobacterium thermolithotrophum DSM 11699 (DESTER_0279) - Dester_0279 95 95 Clostridium ljungdahlii DSM 13528 (CLJU_C26470) - CLJU_c26470 Sebaldella termitidis ATCC 33386 (STERM_3520) - Sterm_3520 Bacillus cereus Rock4-18 (BCERE0024_57410) - bcere0024_57410 95 Bacillus cereus ATCC 14579 (BC_3117) - BC3117 Bacillus anthracis str. Ames (BA_3157) - BA_3157 Clostridium beijerinckii NCIMB 8052 (CBEI_3708) - Cbei_3708 Clostridium carboxidivorans P7 (2 inparalogs) CCARBDRAFT_0143,CLCAR_1582 89 37 Clostridium lentocellum DSM 5427 (CLOLE_1454) - Clole_1454 Clostridium sp. 7_2_43FAA (CSBG_00771) - CSBG_00771 90 Turicibacter sanguinis PC909 (CUW_1022) - CUW_1022 Treponema brennaborense DSM 12168 (TREBR_0434) - Trebr_0434 Ruminococcus albus 8 (CUS_7214) - CUS_7214 87 Streptococcus urinalis 2285-97 (STRUR_0177) - STRUR_0177 74 Sphaerochaeta pleomorpha str. Grapes (SPIGRAPES_0390) - SpiGrapes_0390 Sphaerochaeta globus str. Buddy (SPIBUDDY_1413) - SpiBuddy_1413 99 Treponema succinifaciens DSM 2489 (TRESU_1901) - Tresu_1901 99 83 Eggerthella lenta DSM 2243 (ELEN_0236) - Elen_0236 Eggerthella sp. YY7918 (EGYY_05560) - EGYY_05560 Bacillus cellulosilyticus DSM 2522 (BCELL_3870) - Bcell_3870 Eubacterium siraeum 70/3 (EUS_12270) - EUS_12270 99 Collinsella intestinalis DSM 13280 (COLINT_03546) - COLINT_03546 Collinsella stercoris DSM 13279 (COLSTE_00209) - COLSTE_00209 Ruminococcus albus 7 (RUMAL_1915) - Rumal_1915 Ruminococcus flavefaciens FD-1 (RFLAF_010100003782) - RflaF_010100003782 99 97 Butyrivibrio crossotus DSM 2876 (BUTYVIB_00480) - BUTYVIB_00480 99 Acidaminococcus fermentans DSM 20731 (ACFER_1429) - Acfer_1429 Megasphaera elsdenii DSM 20460 (2 inparalogs) MELS_2008,MELS_0838 74 86 Ruminococcaceae bacterium D16 (HMPREF0866_01721) - HMPREF0866_01721 Slackia heliotrinireducens DSM 20476 (SHEL_13780) - Shel_13780 Pseudoflavonifractor capillosus ATCC 29799 (BACCAP_03507) - BACCAP_03507 Clostridium leptum DSM 753 (CLOLEP_01343) - CLOLEP_01343 Eubacterium cellulosolvens 6 (EUBCEDRAFT_1089) - EubceDRAFT_1089 Ruminococcus champanellensis 18P13 (RUM_05320) - RUM_05320 Lachnospiraceae bacterium 3_1_57FAA_CT1 (HMPREF0994_03193) - HMPREF0994_03193 Clostridium cellulovorans 743B (CLOCEL_3693) - Clocel_3693 82 99 butyrate-producing bacterium SS3/4 (CK3_05390) - CK3_05390 Clostridium symbiosum WAL-14163 (HMPREF9474_04073) - HMPREF9474_04073 Clostridium cf. saccharolyticum K10 (CLS_26990) - CLS_26990 Roseburia intestinalis XB6B4 (RO1_00530) - RO1_00530 92 Clostridium thermocellum ATCC 27405 (CTHE_3129) - Cthe_3129 Roseburia inulinivorans DSM 16841 (ROSEINA2194_00263) - ROSEINA2194_00263 Butyrivibrio proteoclasticus B316 (BPR_I0207) - bpr_I0207 Eubacterium eligens ATCC 27750 (EUBELI_00346) - EUBELI_00346 99 Clostridium bolteae ATCC BAA-613 (CLOBOL_03649) - CLOBOL_03649 70 99 Clostridium saccharolyticum WM1 (CLOSA_0640) - Closa_0640 Parascardovia denticolens DSM 10105 = JCM 12538 (HMPREF0620_0652) - HMPREF0620_0652 Scardovia inopinata F0304 (HMPREF9020_00588) - HMPREF9020_00588 96 Gardnerella vaginalis 409-05 (HMPREF0424_1042) - HMPREF0424_1042 Gardnerella vaginalis ATCC 14018 = JCM 11026 (GVAGA14_010100002858) - GvagA14_010100002858 99 99 Bifidobacterium adolescentis ATCC 15703 (BAD_0499) - BAD_0499 Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 (BIFPSEUDO_02395) - BIFPSEUDO_02395 Bifidobacterium dentium Bd1 (BDP_0681) - BDP_0681 Bifidobacterium angulatum DSM 20098 = JCM 7096 (BIFANG_03314) - BIFANG_03314 Bifidobacterium longum NCC2705 (BL1140) - BL1140 Bifidobacterium breve UCC2003 (BBR_0552) - Bbr_0552 Bifidobacterium animalis subsp. lactis BB-12 (BIF_00851) - BIF_00851 Bifidobacterium gallicum DSM 20093 (BIFGAL_03588) - BIFGAL_03588 99 Anaerotruncus colihominis DSM 17241 (ANACOL_03646) - ANACOL_03646 Blautia hansenii DSM 20583 (BLAHAN_06012) - BLAHAN_06012 Lachnospiraceae bacterium 9_1_43BFAA (HMPREF0987_01867) - HMPREF0987_01867 58 99 74 Faecalibacterium prausnitzii L2-6 (FP2_17850) - FP2_17850 Faecalibacterium cf. prausnitzii KLE1255 (HMPREF9436_00808) - HMPREF9436_00808 92 Faecalibacterium prausnitzii A2-165 (FAEPRAA2165_02226) - FAEPRAA2165_02226 Faecalibacterium prausnitzii SL3/3 (FPR_07470) - FPR_07470 99 Coprococcus eutactus ATCC 27759 (COPEUT_02556) - COPEUT_02556 86 Bacteroides pectinophilus ATCC 43243 (BACPEC_00912) - BACPEC_00912 Clostridium sp. L2-50 (CLOL250_02457) - CLOL250_02457 Ruminococcus sp. 5_1_39BFAA (RSAG_00594) - RSAG_00594 Ruminococcus sp. SR1/5 (CK1_02540) - CK1_02540 Coprococcus catus GD/7 (CC1_22420) - CC1_22420 Dorea formicigenerans ATCC 27755 (DORFOR_00010) - DORFOR_00010 Subdoligranulum variabile DSM 15176 (SUBVAR_04228) - SUBVAR_04228 99 Lactobacillus sakei subsp. sakei 23K (LCA_0302) - LSA0302 Fructobacillus fructosus KCTC 3544 (FFRUK3_010100002056) - FfruK3_010100002056 86 Leuconostoc citreum KM20 (LCK_00749) - LCK_00749 Leuconostoc argentinum KCTC 3773 (LARGK3_010100007224) - LargK3_010100007224 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 (LEUM_0595) - LEUM_0595 Leuconostoc kimchii IMSNU 11154 (LKI_03990) - LKI_03990 Leuconostoc gelidum KCTC 3527 (LGELK3_010100000065) - LgelK3_010100000065 Leuconostoc gasicomitatum LMG 18811 (LEGAS_0196) - LEGAS_0196 Weissella paramesenteroides ATCC 33313 (HMPREF0877_1536) - HMPREF0877_1536 Weissella cibaria KACC 11862 (WCIBK1_010100007567) - WcibK1_010100007567 99 Pediococcus pentosaceus ATCC 25745 (PEPE_0912) - PEPE_0912 69 Lactobacillus brevis ATCC 367 (LVIS_1303) - LVIS_1303 Lactobacillus plantarum WCFS1 (LP_0558) - lp_0558 Lactobacillus casei BL23 (LCABL_06570) - LCABL_06570 Lactobacillus farciminis KCTC 3681 (LFARK3_010100012403) - LfarK3_010100012403 Lactobacillus casei BL23 (LCABL_30000) - LCABL_30000 Lactobacillus rhamnosus GG (2 inparalogs) LRHM_2692,LGG_02798 Lactobacillus amylolyticus DSM 11664 (HMPREF0493_1463) - HMPREF0493_1463 Lactobacillus acidophilus 30SC (LAC30SC_00455) - LAC30SC_00455 97 Lactobacillus kefiranofaciens ZW3 (WANG_1662) - WANG_1662 Lactobacillus ultunensis DSM 16047 (HMPREF0548_1807) - HMPREF0548_1807 62 Lactobacillus acidophilus NCFM (LBA0098) - LBA0098 98 Lactobacillus helveticus DPC 4571 (LHV_0110) - lhv_0110 Lactobacillus crispatus ST1 (LCRIS_00087) - LCRIS_00087 96 Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 (LDB0162) - Ldb0162 Lactobacillus jensenii 1153 (LBJG_00418) - LBJG_00418 Lactobacillus jensenii 27-2-CHN (HMPREF0525_00925) - HMPREF0525_00925 81 Lactobacillus iners AB-1 (LINEA_010100001860) - LineA_010100001860 Lactobacillus johnsonii NCC 533 (LJ_0078) - LJ0078 Lactobacillus gasseri ATCC 33323 (LGAS_0077) - LGAS_0077 Weissella paramesenteroides ATCC 33313 (HMPREF0877_0703) - HMPREF0877_0703 99 Weissella koreensis KACC 15510 (WKK_03100) - WKK_03100 Weissella cibaria KACC 11862 (WCIBK1_010100003182) - WcibK1_010100003182 69 Enterococcus italicus DSM 15952 (HMPREF9088_1937) - HMPREF9088_1937 97 Tetragenococcus halophilus NBRC 12172 (TEH_08020) - TEH_08020 Enterococcus gallinarum EG2 (EGBG_01090) - EGBG_01090 Enterococcus casseliflavus EC20 (ECBG_01114) - ECBG_01114 Lactococcus garvieae Lg2 (LCGL_0401) - LCGL_0401 Lactococcus lactis subsp. lactis Il1403 (YSDE) - L20481 Lactococcus lactis subsp. cremoris MG1363 (LLMG_1960) - llmg_1960 0.65