Generated with ETE http://etetoolkit.org Generated with ETE http://etetoolkit.org 99 99 Clostridium botulinum BKT015925 (CBC4_2431) - CbC4_2431 86 Ilyobacter polytropus DSM 2926 (ILYOP_0886) - Ilyop_0886 Fusobacterium gonidiaformans ATCC 25563 (FGAG_00508) - FGAG_00508 Fusobacterium sp. 7_1 (FSDG_01514) - FSDG_01514 70 Fusobacterium sp. 4_1_13 (FSCG_01880) - FSCG_01880 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 (FN1940) - FN1940 Fusobacterium mortiferum ATCC 9817 (FMAG_01587) - FMAG_01587 Fusobacterium ulcerans ATCC 49185 (FUAG_01763) - FUAG_01763 Fusobacterium varium ATCC 27725 (FVAG_01805) - FVAG_01805 Pyramidobacter piscolens W5455 (HMPREF7215_1169) - HMPREF7215_1169 83 Butyrivibrio fibrisolvens 16/4 (CIY_01860) - CIY_01860 Clostridium ramosum DSM 1402 (CLORAM_00899) - CLORAM_00899 Clostridium spiroforme DSM 1552 (CLOSPI_00399) - CLOSPI_00399 36 Ruminococcus gnavus ATCC 29149 (RUMGNA_01240) - RUMGNA_01240 Lachnospiraceae bacterium 9_1_43BFAA (HMPREF0987_01786) - HMPREF0987_01786 Clostridium acetobutylicum ATCC 824 (CA_C3444) - CA_C3444 Spirochaeta coccoides DSM 17374 (SPICO_1012) - Spico_1012 Sphaerochaeta pleomorpha str. Grapes (SPIGRAPES_2965) - SpiGrapes_2965 Sphaerochaeta globus str. Buddy (SPIBUDDY_1989) - SpiBuddy_1989 Pseudoflavonifractor capillosus ATCC 29799 (BACCAP_00531) - BACCAP_00531 Ruminococcaceae bacterium D16 (HMPREF0866_02944) - HMPREF0866_02944 Solobacterium moorei F0204 (HMPREF9430_01324) - HMPREF9430_01324 Bacteroides plebeius DSM 17135 (BACPLE_01031) - BACPLE_01031 88 Bacteroides salanitronis DSM 18170 (BACSA_3407) - Bacsa_3407 Bacteroides coprocola DSM 17136 (BACCOP_01419) - BACCOP_01419 Bacteroides fragilis NCTC 9343 (BF2132) - BF2132 Paraprevotella xylaniphila YIT 11841 (HMPREF9442_03037) - HMPREF9442_03037 Capnocytophaga sp. oral taxon 329 str. F0087 (HMPREF9074_03786) - HMPREF9074_03786 Prevotella ruminicola 23 (PRU_0038) - PRU_0038 Prevotella marshii DSM 16973 (HMPREF0658_1934) - HMPREF0658_1934 Prevotella sp. oral taxon 299 str. F0039 (HMPREF0669_01696) - HMPREF0669_01696 Prevotella sp. oral taxon 317 str. F0108 (HMPREF0670_02738) - HMPREF0670_02738 Prevotella sp. oral taxon 472 str. F0295 (HMPREF6745_0681) - HMPREF6745_0681 99 Prevotella veroralis F0319 (HMPREF0973_00651) - HMPREF0973_00651 Prevotella denticola F0289 (HMPREF9137_0226) - HMPREF9137_0226 97 Prevotella melaninogenica ATCC 25845 (HMPREF0659_A6141) - HMPREF0659_A6141 Prevotella multiformis DSM 16608 (HMPREF9141_0620) - HMPREF9141_0620 99 Prevotella amnii CRIS 21A-A (HMPREF9018_0384) - HMPREF9018_0384 Prevotella bivia JCVIHMP010 (HMPREF0648_0056) - HMPREF0648_0056 Prevotella disiens FB035-09AN (HMPREF9296_2299) - HMPREF9296_2299 Prevotella nigrescens ATCC 33563 (HMPREF9419_0004) - HMPREF9419_0004 Prevotella pallens ATCC 700821 (HMPREF9144_0669) - HMPREF9144_0669 Prevotella oralis ATCC 33269 (HMPREF0663_11117) - HMPREF0663_11117 Prevotella timonensis CRIS 5C-B1 (HMPREF9019_1759) - HMPREF9019_1759 Prevotella buccalis ATCC 35310 (HMPREF0650_2425) - HMPREF0650_2425 35 Prevotella buccae D17 (HMPREF0649_00061) - HMPREF0649_00061 Prevotella oulorum F0390 (HMPREF9431_01079) - HMPREF9431_01079 Prevotella oris C735 (HMPREF0665_01445) - HMPREF0665_01445 Prevotella salivae DSM 15606 (HMPREF9420_2521) - HMPREF9420_2521 Prevotella bergensis DSM 17361 (HMPREF0645_1992) - HMPREF0645_1992 88 Prevotella dentalis DSM 3688 (PREDE_1058) - HMPREF9136_0931 Prevotella multisaccharivorax DSM 17128 (PREMU_1023) - Premu_1023 Prevotella bryantii B14 (PBR_1213) - PBR_1213 Prevotella copri DSM 18205 (PREVCOP_05802) - PREVCOP_05802 96 Coprococcus eutactus ATCC 27759 (COPEUT_00601) - COPEUT_00601 98 Eubacterium eligens ATCC 27750 (EUBELI_00170) - EUBELI_00170 99 Butyrivibrio proteoclasticus B316 (BPR_I0915) - bpr_I0915 Eubacterium cylindroides T2-87 (EC1_08000) - EC1_08000 97 Ruminococcus flavefaciens FD-1 (RFLAF_010100000415) - RflaF_010100000415 Ruminococcus albus 8 (CUS_5022) - CUS_5022 98 Eubacterium biforme DSM 3989 (EUBIFOR_00995) - EUBIFOR_00995 Faecalibacterium prausnitzii A2-165 (FAEPRAA2165_01294) - FAEPRAA2165_01294 97 Faecalibacterium prausnitzii L2-6 (FP2_09630) - FP2_09630 Faecalibacterium cf. prausnitzii KLE1255 (HMPREF9436_01525) - HMPREF9436_01525 Faecalibacterium prausnitzii SL3/3 (FPR_27980) - FPR_27980 Thermosediminibacter oceani DSM 16646 (TOCE_1004) - Toce_1004 65 Fusobacterium sp. 4_1_13 (FSCG_00648) - FSCG_00648 99 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 (FN1151) - FN1151 Fusobacterium nucleatum subsp. polymorphum ATCC 10953 (NORM1) - FNP_0640 Fusobacterium sp. 7_1 (FSDG_00936) - FSDG_00936 Fusobacterium periodonticum ATCC 33693 (FUSPEROL_01842) - FUSPEROL_01842 92 Fusobacterium sp. D12 (FSEG_00926) - FSEG_00926 Fusobacterium ulcerans ATCC 49185 (FUAG_01895) - FUAG_01895 Fusobacterium varium ATCC 27725 (FVAG_00849) - FVAG_00849 Natranaerobius thermophilus JW/NM-WN-LF (NTHER_0991) - Nther_0991 Halanaerobium hydrogeniformans (HALSA_1701) - Halsa_1701 Halanaerobium praevalens DSM 2228 (HPRAE_1336) - Hprae_1336 Tepidanaerobacter sp. Re1 (TEPRE1_0164) - TepRe1_0164 62 Caldalkalibacillus thermarum TA2.A1 (CATHTA2_1020) - CathTA2_1020 99 93 Tepidanaerobacter sp. Re1 (TEPRE1_0344) - TepRe1_0344 99 Coprothermobacter proteolyticus DSM 5265 (NORM) - COPRO5265_0068 Mahella australiensis 50-1 BON (MAHAU_1428) - Mahau_1428 Mahella australiensis 50-1 BON (MAHAU_0154) - Mahau_0154 Clostridium clariflavum DSM 19732 (CLOCL_1039) - Clocl_1039 Clostridium thermocellum ATCC 27405 (CTHE_2306) - Cthe_2306 Catonella morbi ATCC 51271 (GCWU000282_01322) - GCWU000282_01322 99 Alkaliphilus oremlandii OhILAs (CLOS_0883) - Clos_0883 Granulicatella elegans ATCC 700633 (HMPREF0446_00178) - HMPREF0446_00178 Granulicatella adiacens ATCC 49175 (HMPREF0444_0717) - HMPREF0444_0717 Roseburia intestinalis XB6B4 (RO1_29970) - RO1_29970 99 Clostridium hiranonis DSM 13275 (CLOHIR_00592) - CLOHIR_00592 Holdemania filiformis DSM 12042 (HOLDEFILI_00555) - HOLDEFILI_00555 Solobacterium moorei F0204 (HMPREF9430_01960) - HMPREF9430_01960 Eremococcus coleocola ACS-139-V-Col8 (HMPREF9257_1198) - HMPREF9257_1198 93 Peptoniphilus duerdenii ATCC BAA-1640 (HMPREF9225_1728) - HMPREF9225_1728 Finegoldia magna ATCC 53516 (HMPREF0391_11255) - HMPREF0391_11255 Finegoldia magna ATCC 29328 (FMG_0152) - FMG_0152 Anaerococcus vaginalis ATCC 51170 (HMPREF0078_0117) - HMPREF0078_0117 Anaerococcus hydrogenalis DSM 7454 (ANHYDRO_00863) - ANHYDRO_00863 Anaerococcus lactolyticus ATCC 51172 (HMPREF0072_1713) - HMPREF0072_1713 Anaerococcus prevotii ACS-065-V-Col13 (HMPREF9290_0927) - HMPREF9290_0927 Anaerococcus tetradius ATCC 35098 (HMPREF0077_1007) - HMPREF0077_1007 Anaerococcus prevotii DSM 20548 (APRE_0427) - Apre_0427 77 Roseburia inulinivorans DSM 16841 (ROSEINA2194_03052) - ROSEINA2194_03052 Abiotrophia defectiva ATCC 49176 (GCWU000182_00379) - GCWU000182_00379 Lachnospiraceae bacterium 3_1_57FAA_CT1 (HMPREF0994_03192) - HMPREF0994_03192 butyrate-producing bacterium SS3/4 (CK3_13340) - CK3_13340 Epulopiscium sp. N.t. morphotype B (EPULO_010100006408) - Epulo_010100006408 Holdemania filiformis DSM 12042 (HOLDEFILI_00592) - HOLDEFILI_00592 99 Alkaliphilus metalliredigens QYMF (AMET_1122) - Amet_1122 Clostridiales genomosp. BVAB3 str. UPII9-5 (HMPREF0868_0225) - HMPREF0868_0225 Fusobacterium mortiferum ATCC 9817 (FMAG_00941) - FMAG_00941 Fusobacterium ulcerans ATCC 49185 (FUAG_02816) - FUAG_02816 Fusobacterium varium ATCC 27725 (FVAG_02603) - FVAG_02603 Holdemania filiformis DSM 12042 (HOLDEFILI_01710) - HOLDEFILI_01710 99 Dictyoglomus turgidum DSM 6724 (DTUR_0762) - Dtur_0762 Mesotoga prima MesG1.Ag.4.2 (THEBA_0485) - ThebaDRAFT_0355 Kosmotoga olearia TBF 19.5.1 (KOLE_0754) - Kole_0754 98 Thermotoga neapolitana DSM 4359 (CTN_1762) - CTN_1762 Thermotoga maritima MSB8 (NORM) - TM0815 Thermotoga petrophila RKU-1 (TPET_0113) - Tpet_0113 Thermotoga lettingae TMO (TLET_1903) - Tlet_1903 Thermotoga thermarum DSM 5069 (THETH_0041) - Theth_0041 43 Eubacterium limosum KIST612 (ELI_3350) - ELI_3350 Alkaliphilus metalliredigens QYMF (AMET_3016) - Amet_3016 Bacillus sp. 2_A_57_CT2 (HMPREF1013_05098) - HMPREF1013_05098 Bacillus sp. 2_A_57_CT2 (HMPREF1013_05669) - HMPREF1013_05669 98 Enterococcus gallinarum EG2 (EGBG_00100) - EGBG_00100 Streptococcus suis 05ZYH33 (SSU05_0618) - SSU05_0618 Lactococcus garvieae Lg2 (LCGL_0150) - LCGL_0150 Lactococcus lactis subsp. lactis Il1403 (YVHA) - L154438 Lactococcus lactis subsp. cremoris MG1363 (LLMG_2386) - llmg_2386 43 Streptococcus agalactiae NEM316 (GBS0056) - gbs0056 99 Streptococcus mutans UA159 (SMU_71) - SMU_71 Streptococcus macedonicus ACA-DC 198 (NORM) - SMA_0042 88 Streptococcus infantarius subsp. infantarius CJ18 (SINF_0044) - Sinf_0044 Streptococcus equinus ATCC 9812 (HMPREF0819_1744) - HMPREF0819_1744 Streptococcus macacae NCTC 11558 (STRMA_1685) - STRMA_1685 Streptococcus sp. C150 (HMPREF0848_01791) - HMPREF0848_01791 Streptococcus salivarius 57.I (SSAL_00128) - Ssal_00128 Streptococcus thermophilus LMG 18311 (NORN) - stu1877 Streptococcus vestibularis F0396 (HMPREF9192_1996) - HMPREF9192_1996 Streptococcus downei F0415 (HMPREF9176_0187) - HMPREF9176_0187 Streptococcus criceti HS-6 (STRCR_0518) - STRCR_0518 99 Streptococcus urinalis 2285-97 (STRUR_2242) - STRUR_2242 Streptococcus equi subsp. zooepidemicus (SEZ_0053) - SZO_00480 83 Streptococcus ictaluri 707-05 (STRIC_2061) - STRIC_2061 Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957 (SDD27957_00280) - SDD27957_00280 Streptococcus pyogenes M1 GAS (SPY_0045) - SPy_0045 Streptococcus parauberis NCFD 2020 (SPB_1987) - SPB_1987 Streptococcus uberis 0140J (SUB0066) - SUB0066 Streptococcus pseudoporcinus SPIN 20026 (HMPREF9320_0030) - HMPREF9320_0030 Streptococcus porcinus str. Jelinkova 176 (STRPO_1448) - STRPO_1448 80 Streptococcus suis 05ZYH33 (SSU05_0288) - SSU05_0288 Streptococcus constellatus subsp. pharyngis SK1060 = CCUG 46377 (HMPREF1042_2424) - HMPREF1042_2424 Streptococcus anginosus F0211 (HMPREF0813_00980) - HMPREF0813_00980 Streptococcus anginosus SK52 = DSM 20563 (HMPREF9966_1317) - HMPREF9966_1317 Streptococcus sp. oral taxon 056 str. F0418 (HMPREF9182_1478) - HMPREF9182_1478 86 Streptococcus gordonii str. Challis substr. CH1 (SGO_0140) - SGO_0140 Streptococcus sanguinis SK36 (NORN) - SSA_0097 Streptococcus cristatus ATCC 51100 (2 inparalogs) HMPREF9422_1364,HMPREF9960_0183 Streptococcus infantis SK1302 (SIN_0617) - SIN_0617 91 Streptococcus infantis X (HMPREF1124_1809) - HMPREF1124_1809 98 Streptococcus infantis SK970 (HMPREF9954_1980) - HMPREF9954_1980 95 Streptococcus infantis SK1076 (HMPREF9967_0179) - HMPREF9967_0179 Streptococcus peroris ATCC 700780 (HMPREF9180_1462) - HMPREF9180_1462 99 Streptococcus mitis ATCC 6249 (HMPREF8571_1791) - HMPREF8571_1791 92 Streptococcus oralis Uo5 (SOR_0159) - SOR_0159 Streptococcus mitis B6 (SMI_0194) - smi_0194 89 Streptococcus sp. M334 (HMPREF0851_02033) - HMPREF0851_02033 Streptococcus mitis NCTC 12261 (SM12261_0647) - SM12261_0647 99 Streptococcus pseudopneumoniae IS7493 (SPPN_09320) - SPPN_09320 86 Streptococcus mitis SK597 (SMSK597_1688) - SMSK597_1688 94 Streptococcus mitis SK321 (SMSK321_1285) - SMSK321_1285 96 Streptococcus pneumoniae R6 (SPR1877) - spr1877 Streptococcus pneumoniae D39 (SPD_1876) - SPD_1876 Streptococcus pneumoniae TIGR4 (2 inparalogs) SP_2065,SPNET_02000162 Streptococcus sanguinis ATCC 49296 (HMPREF8578_0298) - HMPREF8578_0298 0 Streptococcus mitis bv. 2 str. F0392 (HMPREF9178_1097) - HMPREF9178_1097 Streptococcus oralis ATCC 35037 (2 inparalogs) HMPREF8579_0419,SMSK23_0403 Streptococcus mitis bv. 2 str. SK95 (HMPREF9965_0457) - HMPREF9965_0457 Streptococcus sp. M143 (HMPREF0850_01793) - HMPREF0850_01793 Streptococcus sp. oral taxon 071 str. 73H25AP (HMPREF9189_1916) - HMPREF9189_1916 Streptococcus parasanguinis ATCC 903 (HMPREF8577_1628) - HMPREF8577_1628 Streptococcus australis ATCC 700641 (2 inparalogs) HMPREF9961_1591,HMPREF9421_0275 35 Haloplasma contractile SSD-17B (HLPCO_00685) - HLPCO_00685 99 82 38 Clostridium sp. BNL1100 (CLO1100_4042) - Clo1100_4042 Clostridium papyrosolvens DSM 2782 (CPAP_1384) - Cpap_1384 Thermoanaerobacter tengcongensis MB4 (NORM) - TTE0255 Thermoanaerobacterium thermosaccharolyticum DSM 571 (TTHE_2440) - Tthe_2440 Thermoanaerobacterium xylanolyticum LX-11 (THEXY_2114) - Thexy_2114 Thermoanaerobacter italicus Ab9 (THIT_0216) - Thit_0216 Thermoanaerobacter wiegelii Rt8.B1 (THEWI_0252) - Thewi_0252 Thermoanaerobacter pseudethanolicus ATCC 33223 (TETH39_2016) - Teth39_2016 Clostridium sp. D5 (HMPREF0240_01752) - HMPREF0240_01752 Vibrio metschnikovii CIP 69.14 (VIB_002456) - VIB_002456 Vibrio furnissii NCTC 11218 (VFU_B01219) - vfu_B01219 86 Pantoea sp. At-9b (PAT9B_2440) - Pat9b_2440 Pantoea ananatis LMG 20103 (YEEO) - PANA_2374 Pantoea sp. aB (PANABDRAFT_4018) - PanABDRAFT_4018 Pantoea vagans C9-1 (YEEO) - Pvag_1825 Erwinia billingiae Eb661 (EBC_28810) - EbC_28810 Erwinia tasmaniensis Et1/99 (ETA_13660) - ETA_13660 Erwinia amylovora CFBP1430 (YEEO) - EAMY_2212 Erwinia pyrifoliae Ep1/96 (EPC_14280) - EpC_14280 97 Rahnella sp. Y9602 (RAHAQ_1606) - Rahaq_1606 Rahnella aquatilis CIP 78.65 = ATCC 33071 (AEX51545.1) - Rahaq2_1670 99 Enterobacteriaceae bacterium 9_2_54FAA (HMPREF0864_00291) - HMPREF0864_00291 Serratia odorifera DSM 4582 (HMPREF0758_2944) - HMPREF0758_2944 Serratia odorifera 4Rx13 (SOD_C01310) - SOD_c01310 Serratia proteamaculans 568 (SPRO_3106) - Spro_3106 95 Cronobacter sakazakii ATCC BAA-894 (ESA_01214) - ESA_01214 Enterobacter sp. 638 (ENT638_2574) - Ent638_2574 Enterobacter asburiae LF7a (ENTAS_2776) - Entas_2776 92 Enterobacter cancerogenus ATCC 35316 (ENTCAN_06797) - ENTCAN_06797 Enterobacter cloacae EcWSU1 (YEEO) - EcWSU1_02934 Enterobacter cloacae subsp. cloacae ATCC 13047 (ECL_03329) - ECL_03329 Citrobacter sp. 30_2 (CSAG_00878) - CSAG_00878 Citrobacter youngae ATCC 29220 (CIT292_07587) - CIT292_07587 45 99 Citrobacter rodentium ICC168 (ROD_20951) - ROD_20951 Citrobacter koseri ATCC BAA-895 (CKO_00837) - CKO_00837 Escherichia coli str. K-12 substr. MG1655 (YEEO) - b1985 0 Escherichia coli str. K-12 substr. DH10B (YEEO) - ECDH10B_2129 0 Escherichia coli BL21(DE3) (YEEO) - ECD_01896 0 Escherichia coli BL21(DE3) (B21_01885) - B21_01885 0 Escherichia coli str. K-12 substr. W3110 (YEEO) - 85675181 99 Escherichia coli ATCC 8739 (YEEO) - EcolC_1659 Escherichia coli CFT073 (YEEO) - c2448 Escherichia coli 536 (YEEO) - ECP_1960 Salmonella enterica subsp. arizonae serovar str. RSK2980 (SARI_00879) - SARI_00879 Salmonella bongori NCTC 12419 (SBG_1849) - SBG_1849 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (YEEO) - STM2013 Salmonella enterica subsp. enterica serovar Typhi str. CT18 (T0862) - STY2216 Enterobacter cloacae SCF1 (ENC_24890) - Entcl_1705 Klebsiella oxytoca KCTC 1686 (KOX_24350) - KOX_24350 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (YEEO) - KPN_02447 Yersinia enterocolitica subsp. enterocolitica 8081 (YE2679) - YE2679 Yersinia pestis CO92 (YEEO) - YPO1571 Yersinia pestis KIM10 (YEEO) - y2593 99 Pectobacterium atrosepticum SCRI1043 (ECA2762) - ECA2762 82 Pectobacterium carotovorum subsp. carotovorum PC1 (PC1_1590) - PC1_1590 Pectobacterium wasabiae WPP163 (PECWA_2872) - Pecwa_2872 99 Dickeya dadantii Ech703 (DD703_1504) - Dd703_1504 Dickeya dadantii 3937 (YEEO) - Dda3937_02791 97 Dickeya dadantii Ech586 (DD586_1491) - Dd586_1491 Dickeya zeae Ech1591 (DD1591_1531) - Dd1591_1531 90 Turicibacter sanguinis PC909 (CUW_0770) - CUW_0770 Thermoanaerobacter italicus Ab9 (THIT_1731) - Thit_1731 Thermoanaerobacterium xylanolyticum LX-11 (THEXY_2046) - Thexy_2046 Thermoanaerobacterium thermosaccharolyticum DSM 571 (TTHE_2394) - Tthe_2394 98 Mahella australiensis 50-1 BON (MAHAU_2587) - Mahau_2587 Clostridium acetobutylicum ATCC 824 (CA_C1611) - CA_C1611 Clostridium butyricum E4 str. BoNT E BL5262 (CLP_2419) - CLP_2419 95 Clostridium beijerinckii NCIMB 8052 (CBEI_2413) - Cbei_2413 Clostridium botulinum E1 str. BoNT E Beluga (CLO_1200) - CLO_1200 Clostridium cellulolyticum H10 (CCEL_0441) - Ccel_0441 Clostridium sp. BNL1100 (CLO1100_1439) - Clo1100_1439 Clostridium papyrosolvens DSM 2782 (CPAP_1036) - Cpap_1036 75 Eubacterium biforme DSM 3989 (EUBIFOR_01434) - EUBIFOR_01434 97 Bacteroides pectinophilus ATCC 43243 (BACPEC_00520) - BACPEC_00520 69 Clostridium lentocellum DSM 5427 (CLOLE_3266) - Clole_3266 99 Eubacterium cellulosolvens 6 (EUBCEDRAFT_2042) - EubceDRAFT_2042 Roseburia inulinivorans DSM 16841 (ROSEINA2194_04347) - ROSEINA2194_04347 Ruminococcus gnavus ATCC 29149 (RUMGNA_01327) - RUMGNA_01327 27 245018 (CL2_18230) - CL2_18230 Ruminococcus lactaris ATCC 29176 (RUMLAC_00201) - RUMLAC_00201 Eubacterium hallii DSM 3353 (EUBHAL_01449) - EUBHAL_01449 98 Ruminococcus sp. 5_1_39BFAA (RSAG_01287) - RSAG_01287 22 Dorea longicatena DSM 13814 (DORLON_01434) - DORLON_01434 99 Ruminococcus torques L2-14 (RTO_24450) - RTO_24450 99 Coprococcus comes ATCC 27758 (COPCOM_01087) - COPCOM_01087 Ruminococcus obeum A2-162 (CK5_09510) - CK5_09510 Ruminococcus sp. SR1/5 (CK1_06480) - CK1_06480 Eubacterium rectale DSM 17629 (EUR_02870) - EUR_02870 14 Eubacterium eligens ATCC 27750 (EUBELI_01734) - EUBELI_01734 Roseburia intestinalis XB6B4 (RO1_07360) - RO1_07360 99 98 Clostridium symbiosum WAL-14163 (HMPREF9474_00375) - HMPREF9474_00375 Butyrivibrio proteoclasticus B316 (BPR_I1851) - bpr_I1851 Clostridium cf. saccharolyticum K10 (CLS_03620) - CLS_03620 99 99 Pseudoflavonifractor capillosus ATCC 29799 (BACCAP_03590) - BACCAP_03590 Spirochaeta coccoides DSM 17374 (SPICO_0996) - Spico_0996 Sphaerochaeta pleomorpha str. Grapes (SPIGRAPES_2987) - SpiGrapes_2987 Sphaerochaeta globus str. Buddy (SPIBUDDY_1967) - SpiBuddy_1967 Clostridiales bacterium 1_7_47FAA (CBFG_00284) - CBFG_00284 Clostridium bolteae ATCC BAA-613 (CLOBOL_04710) - CLOBOL_04710 Faecalibacterium prausnitzii A2-165 (FAEPRAA2165_00293) - FAEPRAA2165_00293 Faecalibacterium prausnitzii L2-6 (FP2_20510) - FP2_20510 Faecalibacterium cf. prausnitzii KLE1255 (HMPREF9436_00168) - HMPREF9436_00168 Faecalibacterium prausnitzii SL3/3 (FPR_08830) - FPR_08830 Eubacterium eligens ATCC 27750 (EUBELI_01393) - EUBELI_01393 Roseburia hominis A2-183 (RHOM_14385) - RHOM_14385 Roseburia intestinalis XB6B4 (RO1_01140) - RO1_01140 99 Anaerotruncus colihominis DSM 17241 (ANACOL_01507) - ANACOL_01507 96 Treponema brennaborense DSM 12168 (TREBR_2161) - Trebr_2161 Treponema azotonutricium ZAS-9 (TREAZ_3382) - TREAZ_3382 Treponema primitia ZAS-2 (TREPR_0733) - TREPR_0733 Treponema azotonutricium ZAS-9 (TREAZ_1117) - TREAZ_1117 Treponema primitia ZAS-2 (TREPR_1021) - TREPR_1021 Treponema azotonutricium ZAS-9 (TREAZ_1116) - TREAZ_1116 Holdemania filiformis DSM 12042 (HOLDEFILI_03201) - HOLDEFILI_03201 Clostridium sp. HGF2 (HMPREF9406_0930) - HMPREF9406_0930 Erysipelotrichaceae bacterium 3_1_53 (HMPREF0983_00268) - HMPREF0983_00268 Coprobacillus sp. 29_1 (HMPREF9488_02504) - HMPREF9488_02504 97 Clostridium spiroforme DSM 1552 (CLOSPI_01747) - CLOSPI_01747 Clostridium ramosum DSM 1402 (CLORAM_02790) - CLORAM_02790 54 Marvinbryantia formatexigens DSM 14469 (BRYFOR_06434) - BRYFOR_06434 99 Lachnospiraceae bacterium 1_4_56FAA (HMPREF0988_02155) - HMPREF0988_02155 Clostridiales bacterium 1_7_47FAA (CBFG_04536) - CBFG_04536 Clostridium bolteae ATCC BAA-613 (CLOBOL_01664) - CLOBOL_01664 95 92 Clostridium symbiosum WAL-14163 (HMPREF9474_01853) - HMPREF9474_01853 Clostridium leptum DSM 753 (CLOLEP_02561) - CLOLEP_02561 99 Shuttleworthia satelles DSM 14600 (GCWU000342_00104) - GCWU000342_00104 Roseburia hominis A2-183 (RHOM_02790) - RHOM_02790 Clostridium ramosum DSM 1402 (CLORAM_01882) - CLORAM_01882 Marvinbryantia formatexigens DSM 14469 (BRYFOR_09026) - BRYFOR_09026 Clostridium methylpentosum DSM 5476 (CLOSTMETH_02518) - CLOSTMETH_02518 37 Clostridium butyricum E4 str. BoNT E BL5262 (CLP_1265) - CLP_1265 Clostridium ramosum DSM 1402 (CLORAM_01401) - CLORAM_01401 Clostridium bolteae ATCC BAA-613 (CLOBOL_07277) - CLOBOL_07277 Lachnospiraceae oral taxon 107 str. F0167 (HMPREF0491_02282) - HMPREF0491_02282 Eubacterium saburreum DSM 3986 (HMPREF0381_0310) - HMPREF0381_0310 Subdoligranulum variabile DSM 15176 (SUBVAR_04134) - SUBVAR_04134 Faecalibacterium prausnitzii A2-165 (FAEPRAA2165_00341) - FAEPRAA2165_00341 68 Faecalibacterium prausnitzii L2-6 (FP2_15300) - FP2_15300 Faecalibacterium cf. prausnitzii KLE1255 (HMPREF9436_02278) - HMPREF9436_02278 Faecalibacterium prausnitzii SL3/3 (FPR_03450) - FPR_03450 Lachnospiraceae bacterium 3_1_57FAA_CT1 (HMPREF0994_01856) - HMPREF0994_01856 Marvinbryantia formatexigens DSM 14469 (BRYFOR_06559) - BRYFOR_06559 245018 (CL2_20120) - CL2_20120 Anaerostipes caccae DSM 14662 (ANACAC_02167) - ANACAC_02167 99 Alkaliphilus oremlandii OhILAs (CLOS_0947) - Clos_0947 96 butyrate-producing bacterium SS3/4 (CK3_03350) - CK3_03350 Clostridium bartlettii DSM 16795 (CLOBAR_02815) - CLOBAR_02815 Clostridium sp. L2-50 (CLOL250_01552) - CLOL250_01552 94 Coprococcus comes ATCC 27758 (COPCOM_03581) - COPCOM_03581 Dorea formicigenerans ATCC 27755 (DORFOR_01857) - DORFOR_01857 46 Clostridium hylemonae DSM 15053 (CLOHYLEM_07538) - CLOHYLEM_07538 99 Dorea longicatena DSM 13814 (DORLON_01257) - DORLON_01257 Clostridium scindens ATCC 35704 (CLOSCI_03103) - CLOSCI_03103 Lachnospiraceae bacterium 1_4_56FAA (HMPREF0988_00855) - HMPREF0988_00855 Clostridium sp. D5 (HMPREF0240_02176) - HMPREF0240_02176 Lachnospiraceae bacterium 2_1_46FAA (HMPREF9477_01705) - HMPREF9477_01705 Lachnospiraceae bacterium 9_1_43BFAA (HMPREF0987_01855) - HMPREF0987_01855 Blautia hydrogenotrophica DSM 10507 (RUMHYD_03621) - RUMHYD_03621 Anaerofustis stercorihominis DSM 17244 (ANASTE_00158) - ANASTE_00158 Acidaminococcus fermentans DSM 20731 (ACFER_1847) - Acfer_1847 Brachyspira murdochii DSM 12563 (BMUR_0347) - Bmur_0347 Brachyspira hyodysenteriae WA1 (BHWA1_00650) - BHWA1_00650 Brachyspira intermedia PWS/A (BINT_1139) - Bint_1139 Campylobacter concisus 13826 (CCC13826_1132) - CCC13826_1132 Campylobacter curvus 525.92 (CCV52592_0875) - CCV52592_0875 Eubacterium hallii DSM 3353 (EUBHAL_03224) - EUBHAL_03224 Oscillibacter valericigenes Sjm18-20 (OBV_13670) - OBV_13670 Lachnospiraceae bacterium 3_1_57FAA_CT1 (HMPREF0994_03619) - HMPREF0994_03619 96 Clostridium saccharolyticum WM1 (CLOSA_0464) - Closa_0464 Clostridium phytofermentans ISDg (CPHY_1252) - Cphy_1252 Clostridium phytofermentans ISDg (CPHY_1724) - Cphy_1724 Listeria grayi DSM 20601 (HMPREF0556_10606) - HMPREF0556_10606 Enterococcus italicus DSM 15952 (HMPREF9088_0373) - HMPREF9088_0373 Bacillus coagulans 36D1 (BCOA_0581) - Bcoa_0581 99 Lactobacillus coryniformis subsp. coryniformis KCTC 3167 (LCORCK3_010100010071) - LcorcK3_010100010071 Ethanoligenens harbinense YUAN-3 (ETHHA_2152) - Ethha_2152 Paenibacillus sp. JDR-2 (PJDR2_0258) - Pjdr2_0258 29 Paenibacillus polymyxa M1 (YEEO) - PPM_0256 80